com.compomics.util.experiment.biology

Class AtomImpl

java.lang.Object

com.compomics.util.experiment.biology.AtomImpl

All Implemented Interfaces:

Serializable

public class AtomImpl
extends Object
implements Serializable

Class for a specific atom.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
AtomImpl(Atom atom, Integer isotope) Constructor.

Method Summary

Modifier and Type	Method and Description
Atom	getAtom() Returns the atom.
Integer	getIsotope() Returns the isotope, 0 for monoisotope.
Double	getMass() Returns the mass of the atom.
boolean	isSameAs(AtomImpl anotherAtom) Indicates whether another atom is the same as this one.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AtomImpl

public AtomImpl(Atom atom,
                Integer isotope)

Constructor.

Parameters:

atom - the reference atom

isotope - the isotope, 0 for monoisotope

Method Detail

getMass

public Double getMass()

Returns the mass of the atom.

Returns:

the mass of the atom

toString

public String toString()

Overrides:

toString in class Object

isSameAs

public boolean isSameAs(AtomImpl anotherAtom)

Indicates whether another atom is the same as this one.

Parameters:

anotherAtom - another atom of interest

Returns:

a boolean indicating whether another atom is the same as this one

getAtom

public Atom getAtom()

Returns the atom.

Returns:

the atom

getIsotope

public Integer getIsotope()

Returns the isotope, 0 for monoisotope.

Returns:

the isotope