com.compomics.util.experiment.biology.genes.ensembl

Class EnsemblVersion

java.lang.Object

com.compomics.util.experiment.biology.genes.ensembl.EnsemblVersion

public class EnsemblVersion
extends Object

Class for the handling of Ensembl versions.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor and Description
EnsemblVersion()

Method Summary

Modifier and Type	Method and Description
static Integer	getCurrentEnsemblVersion(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision) Returns the current Ensembl version number.
static String	getEnsemblSchemaName(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision) Returns the name of the Ensembl schema for BioMart queries.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnsemblVersion

public EnsemblVersion()

Method Detail

getCurrentEnsemblVersion

public static Integer getCurrentEnsemblVersion(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)

Returns the current Ensembl version number. Null if not found.

Parameters:

ensemblGenomeDivision - the Ensembl genome division, null if not Ensembl genome

Returns:

the current Ensembl version number

getEnsemblSchemaName

public static String getEnsemblSchemaName(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)

Returns the name of the Ensembl schema for BioMart queries.

Parameters:

ensemblGenomeDivision - the Ensembl genome division

Returns:

the name of the Ensembl schema for BioMart queries