Uses of Package
com.compomics.util.experiment.personalization

Packages that use com.compomics.util.experiment.personalization

Package	Description
com.compomics.util.experiment	Gene factory classes.
com.compomics.util.experiment.biology	Experiment classes related to biological entities.
com.compomics.util.experiment.biology.atoms	The atom classes.
com.compomics.util.experiment.biology.ions	Experiment classes related to ions.
com.compomics.util.experiment.identification	Experiment classes related to identifications.
com.compomics.util.experiment.identification.amino_acid_tags	Amino Acid Tag classes.
com.compomics.util.experiment.identification.identifications	Experiment classes related to MS//MS identifications.
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.
com.compomics.util.experiment.identification.matches_iterators	Identification match iterators.
com.compomics.util.experiment.identification.protein_sequences	Protein sequence handling related classes.
com.compomics.util.experiment.identification.spectrum_assumptions	Implementations of the SpectrumIdentificationAssumption.
com.compomics.util.experiment.io.identifications	Experiment identification classes.
com.compomics.util.experiment.io.identifications.idfilereaders	Experiment classes related to reading search engine files.
com.compomics.util.experiment.io.massspectrometry	Reading and indexing of mgf files.
com.compomics.util.experiment.massspectrometry	Experiment classes related to spectra.
com.compomics.util.experiment.personalization	Experiment customization classes.
com.compomics.util.experiment.quantification	Experiment classes related to quantification.
com.compomics.util.experiment.quantification.reporterion	Experiment classes related to reporter ions.
com.compomics.util.experiment.refinementparameters	Experiment classes related to specific parametrization of experiment objects.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.biology

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.biology.atoms

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.biology.ions

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification

Class and Description
ExperimentObject This abstract class provides customization facilities.
UrParameter This interface will be used to reference refined parameters.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.amino_acid_tags

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.identifications

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.matches

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.matches_iterators

Class and Description
UrParameter This interface will be used to reference refined parameters.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.protein_sequences

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.identification.spectrum_assumptions

Class and Description
ExperimentObject This abstract class provides customization facilities.
UrParameter This interface will be used to reference refined parameters.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.io.identifications

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.io.identifications.idfilereaders

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.io.massspectrometry

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.massspectrometry

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.personalization

Class and Description
UrParameter This interface will be used to reference refined parameters.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.quantification

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.quantification.reporterion

Class and Description
ExperimentObject This abstract class provides customization facilities.

Classes in com.compomics.util.experiment.personalization used by com.compomics.util.experiment.refinementparameters

Class and Description
UrParameter This interface will be used to reference refined parameters.