Package com.compomics.util.gui.parameters.identification_parameters

GUI classes for parameters, settings and preferences used for identification.

See: Description

Interface Summary

Interface	Description
AlgorithmSettingsDialog	Interface for an algorithm settings dialog.
ValidationQCPreferencesDialogParent	Interface allowing the editing of filters from other packages.

Class Summary

Class	Description
AnnotationSettingsDialog	A simple dialog for setting the spectrum annotation preferences.
EnzymeSelectionDialog	Simple dialog for mapping a PRIDE enzyme to a utilities enzyme.
FractionSettingsDialog	FractionSettingsDialog.
GenePreferencesDialog	Dialog for editing the Gene Mapping Preferences.
IdentificationParametersNameDialog
MatchesImportFiltersDialog	The PeptideShaker import settings dialog.
ProteinInferenceSettingsDialog	Dialog for the edition of the protein inference settings
PsmScoringSettingsDialog	Dialog for the edition of the PSM scoring settings.
PTMLocalizationParametersDialog	PTMLocalizationParametersDialog.
SearchSettingsDialog	The search settings dialog.
SequenceMatchingSettingsDialog	Dialog for the edition of the sequence matching settings.
SpectrumMatchingSettingsDialog	SpectrumMatchingSettingsDialog.
ValidationQCPreferencesDialog	Dialog for the edition of validation QC filters.
ValidationSettingsDialog	Dialog for the edition of the sequence matching settings

Package com.compomics.util.gui.parameters.identification_parameters Description

GUI classes for parameters, settings and preferences used for identification.