public class ElementaryIon extends Ion
Ion.IonType
Modifier and Type | Field and Description |
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static ElementaryIon |
proton
A proton.
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static int |
PROTON
Subtype int for a proton.
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atomChain, theoreticMass, type
Constructor and Description |
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ElementaryIon(String name,
double theoreticMass,
int subType)
Constructor.
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Modifier and Type | Method and Description |
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String |
getName()
Returns the name of the ion.
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ArrayList<NeutralLoss> |
getNeutralLosses()
Returns the possible neutral losses of this ion type.
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static ArrayList<Integer> |
getPossibleSubtypes()
Returns an arraylist of possible subtypes.
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CvTerm |
getPrideCvTerm()
Returns the pride cv term adapted to the fragment ion.
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int |
getSubType()
Returns the ion subtype.
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String |
getSubTypeAsString()
Returns the subtype as string.
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boolean |
isSameAs(Ion anotherIon)
Returns a boolean indicating whether the ion is the same as another ion.
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getAtomicComposition, getGenericIon, getGenericIon, getImplementedIonTypes, getNeutralLossesAsString, getNeutralLossesAsString, getPossibleSubtypes, getTheoreticMass, getTheoreticMz, getType, getTypeAsString, getTypeAsString, hasNeutralLosses, setAtomicComposition, setTheoreticMass
addUrParam, getParameterKey, getUrParam
public static final int PROTON
public static final ElementaryIon proton
public ElementaryIon(String name, double theoreticMass, int subType)
name
- the name of the iontheoreticMass
- the theoretic mass of the ionsubType
- the subtype indexpublic String getName()
Ion
public CvTerm getPrideCvTerm()
Ion
getPrideCvTerm
in class Ion
public int getSubType()
Ion
getSubType
in class Ion
public String getSubTypeAsString()
Ion
getSubTypeAsString
in class Ion
public static ArrayList<Integer> getPossibleSubtypes()
public ArrayList<NeutralLoss> getNeutralLosses()
Ion
getNeutralLosses
in class Ion
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