com.compomics.util.experiment.personalization

Class ExperimentObject

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

All Implemented Interfaces:

Serializable, Cloneable

Direct Known Subclasses:

AminoAcidPattern, AminoAcidSequence, AndromedaIdfileReader, Atom, Charge, DirecTagIdfileReader, Enzyme, FastaIndex, Identification, IdentificationMatch, IdentificationMethod, Ion, IonMatch, MassGap, MgfIndex, ModificationMatch, MsAmandaIdfileReader, MsExperiment, MzIdentMLIdfileReader, MzIdentMLIdfileSearchParametersConverter, NeutralLoss, NovorIdfileReader, Peak, PepNovoIdfileReader, Peptide, PNovoIdfileReader, Precursor, Protein, ProteomicAnalysis, PTM, Quantification, ReporterMethodFactory, Sample, SampleAnalysisSet, Spectrum, SpectrumIdentificationAssumption, Tag, TideIdfileReader

public abstract class ExperimentObject
extends Object
implements Serializable, Cloneable

This abstract class provides customization facilities. Tool dependent parameters can be added to classes extending this class.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ExperimentObject()

Method Summary

Modifier and Type	Method and Description
void	addUrParam(UrParameter parameter) Method to add a user refinement parameter.
static String	getParameterKey(UrParameter parameter) Returns the key of a personalization parameter.
UrParameter	getUrParam(UrParameter parameter) Method which returns the refinement parameter.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExperimentObject

public ExperimentObject()

Method Detail

addUrParam

public void addUrParam(UrParameter parameter)

Method to add a user refinement parameter.

Parameters:

parameter - The parameter

getUrParam

public UrParameter getUrParam(UrParameter parameter)

Method which returns the refinement parameter.

Parameters:

parameter - the desired parameter

Returns:

the value stored. Null if not found.

getParameterKey

public static String getParameterKey(UrParameter parameter)

Returns the key of a personalization parameter.

Parameters:

parameter - the desired parameter

Returns:

the corresponding Key