com.compomics.util.experiment

Class SampleAnalysisSet

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.SampleAnalysisSet

All Implemented Interfaces:

Serializable, Cloneable

public class SampleAnalysisSet
extends ExperimentObject

A sample measurement set is a set of replicates from a common sample.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SampleAnalysisSet(Sample referenceSample, ArrayList<ProteomicAnalysis> replicates) Contructor for a set of analysis of a sample.
SampleAnalysisSet(Sample referenceSample, ProteomicAnalysis replicate) Contructor for an analysis of a sample without replicates.

Method Summary

Modifier and Type	Method and Description
ProteomicAnalysis	getProteomicAnalysis(int replicateNumber) Returns the analysis corresponding to the selected replicate.
ArrayList<Integer>	getReplicateNumberList() Returns a list containing replicate numbers.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, getParameterKey, getUrParam

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SampleAnalysisSet

public SampleAnalysisSet(Sample referenceSample,
                         ProteomicAnalysis replicate)

Contructor for an analysis of a sample without replicates.

Parameters:

referenceSample - the reference sample

replicate - the analysis for this sample

SampleAnalysisSet

public SampleAnalysisSet(Sample referenceSample,
                         ArrayList<ProteomicAnalysis> replicates)

Contructor for a set of analysis of a sample.

Parameters:

referenceSample - the reference sample

replicates - the set of replicates for this sample

Method Detail

getProteomicAnalysis

public ProteomicAnalysis getProteomicAnalysis(int replicateNumber)

Returns the analysis corresponding to the selected replicate.

Parameters:

replicateNumber - index of the replicate analyzed

Returns:

the proteomic analysis of the replicate

getReplicateNumberList

public ArrayList<Integer> getReplicateNumberList()

Returns a list containing replicate numbers.

Returns:

a list containing replicate numbers