com.compomics.util.experiment

Class ProteomicAnalysis

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.ProteomicAnalysis

All Implemented Interfaces:

Serializable, Cloneable

public class ProteomicAnalysis
extends ExperimentObject

This class models a proteomic analysis.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ProteomicAnalysis(int index) Constructor for a proteomic analysis.

Method Summary

Modifier and Type	Method and Description
void	addIdentificationResults(int identificationMethod, Identification identificationResults) Adds identification results obtained with an identification method.
void	addQuantificationResults(Quantification.QuantificationMethod quantificationMethod, Quantification quantificationResutls) Adds quantification results to the current analysis.
Identification	getIdentification(int identificationMethod) Returns identification results obtained with an identification method.
int	getIndex() Get the index of the replicate.
Quantification	getQuantification(Quantification.QuantificationMethod quantificationMethod) Returns quantification results obtain with a quantification method.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, getParameterKey, getUrParam

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteomicAnalysis

public ProteomicAnalysis(int index)

Constructor for a proteomic analysis.

Parameters:

index - the index of the replicate

Method Detail

getIndex

public int getIndex()

Get the index of the replicate.

Returns:

the index of the replicate

addQuantificationResults

public void addQuantificationResults(Quantification.QuantificationMethod quantificationMethod,
                                     Quantification quantificationResutls)

Adds quantification results to the current analysis.

Parameters:

quantificationMethod - the quantification method used

quantificationResutls - the quantification results

getQuantification

public Quantification getQuantification(Quantification.QuantificationMethod quantificationMethod)

Returns quantification results obtain with a quantification method.

Parameters:

quantificationMethod - the quantification method used

Returns:

the quantification results

addIdentificationResults

public void addIdentificationResults(int identificationMethod,
                                     Identification identificationResults)

Adds identification results obtained with an identification method.

Parameters:

identificationMethod - the identification method used

identificationResults - the identification results obtained

getIdentification

public Identification getIdentification(int identificationMethod)

Returns identification results obtained with an identification method.

Parameters:

identificationMethod - the identification method used

Returns:

the identification results