com.compomics.util.experiment.quantification

Enum Quantification.QuantificationMethod

java.lang.Object

java.lang.Enum<Quantification.QuantificationMethod>

com.compomics.util.experiment.quantification.Quantification.QuantificationMethod

All Implemented Interfaces:

Serializable, Comparable<Quantification.QuantificationMethod>

Enclosing class:

Quantification

public static enum Quantification.QuantificationMethod
extends Enum<Quantification.QuantificationMethod>

The implemented quantification methods.

Enum Constant Summary

Enum Constants

Enum Constant and Description
MS1_LABEL Relative quantification by comparison of labeled versions of the peptides in the same MS1 map (like SILAC)
MS1_LABEL_FREE relative quantification by comparison of peptide intensities extracted from the MS1 map or XIC
REPORTER_IONS Relative quantification by comparison of reporter ion intensities
SPECTRUM_COUNTING Relative or absolute quantification by counting identified spectra (like emPAI or NSAF)

Method Summary

Modifier and Type	Method and Description
static Quantification.QuantificationMethod	valueOf(String name) Returns the enum constant of this type with the specified name.
static Quantification.QuantificationMethod[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

MS1_LABEL_FREE

public static final Quantification.QuantificationMethod MS1_LABEL_FREE

relative quantification by comparison of peptide intensities extracted from the MS1 map or XIC

MS1_LABEL

public static final Quantification.QuantificationMethod MS1_LABEL

Relative quantification by comparison of labeled versions of the peptides in the same MS1 map (like SILAC)

SPECTRUM_COUNTING

public static final Quantification.QuantificationMethod SPECTRUM_COUNTING

Relative or absolute quantification by counting identified spectra (like emPAI or NSAF)

REPORTER_IONS

public static final Quantification.QuantificationMethod REPORTER_IONS

Relative quantification by comparison of reporter ion intensities

Method Detail

values

public static Quantification.QuantificationMethod[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Quantification.QuantificationMethod c : Quantification.QuantificationMethod.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Quantification.QuantificationMethod valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null