com.compomics.util.experiment.io.identifications

Class MzIdentMLIdfileSearchParametersConverter

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.io.identifications.MzIdentMLIdfileSearchParametersConverter

All Implemented Interfaces:

Serializable, Cloneable

public class MzIdentMLIdfileSearchParametersConverter
extends ExperimentObject

Reads search parameters from a mzIdentML result files. (Work in progress...)

Author:

Harald Barsnes

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
MzIdentMLIdfileSearchParametersConverter()

Method Summary

Modifier and Type	Method and Description
static String	getSearchParameters(File mzIdentMLFile, SearchParameters searchParameters, String species, WaitingHandler waitingHandler) Constructor.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, getParameterKey, getUrParam

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzIdentMLIdfileSearchParametersConverter

public MzIdentMLIdfileSearchParametersConverter()

Method Detail

getSearchParameters

public static String getSearchParameters(File mzIdentMLFile,
                                         SearchParameters searchParameters,
                                         String species,
                                         WaitingHandler waitingHandler)
                                  throws FileNotFoundException,
                                         IOException,
                                         ClassNotFoundException

Constructor.

Parameters:

mzIdentMLFile - the mzIdentML file

searchParameters - the search parameters object to save to

species - the current species

waitingHandler - the waiting handler

Returns:

the extracted search parameters

Throws:

FileNotFoundException - if a FileNotFoundException occurs

IOException - if a IOException occurs

ClassNotFoundException - if a ClassNotFoundException occurs