Package | Description |
---|---|
com.compomics.util.experiment.biology.genes.ensembl |
Classes for the handling of Ensembl data.
|
com.compomics.util.experiment.biology.taxonomy.mappings |
Classes related to species mapping.
|
com.compomics.util.gui.genes |
Dialogs for the handling of genes.
|
Modifier and Type | Method and Description |
---|---|
static Integer |
EnsemblVersion.getCurrentEnsemblVersion(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Returns the current Ensembl version number.
|
static String |
EnsemblVersion.getEnsemblSchemaName(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Returns the name of the Ensembl schema for BioMart queries.
|
Modifier and Type | Method and Description |
---|---|
EnsemblGenomesSpecies.EnsemblGenomeDivision |
EnsemblGenomesSpecies.getDivision(Integer taxon)
Returns the division corresponding to the given NCBI taxon.
|
static EnsemblGenomesSpecies.EnsemblGenomeDivision |
EnsemblGenomesSpecies.EnsemblGenomeDivision.getEnsemblGenomeDivisionFromName(String ensemblName)
Returns the EnsemblGenomeDivision corresponding to the given Ensembl name.
|
static EnsemblGenomesSpecies.EnsemblGenomeDivision |
EnsemblGenomesSpecies.EnsemblGenomeDivision.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static EnsemblGenomesSpecies.EnsemblGenomeDivision[] |
EnsemblGenomesSpecies.EnsemblGenomeDivision.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
String |
SpeciesDialog.getTypeForGenomeDivision(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Deprecated.
Returns the display name of an Ensembl genome division.
|
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