Uses of Interface
com.compomics.util.experiment.identification.amino_acid_tags.TagComponent

Packages that use TagComponent

Package	Description
com.compomics.util.experiment.biology	Experiment classes related to biological entities.
com.compomics.util.experiment.identification.amino_acid_tags	Amino Acid Tag classes.

Uses of TagComponent in com.compomics.util.experiment.biology

Classes in com.compomics.util.experiment.biology that implement TagComponent

Modifier and Type	Class and Description
class	AminoAcidPattern An amino acid pattern is a sequence of amino acids.
class	AminoAcidSequence This class represents a series of amino acids with associated modifications.
class	MassGap An undefined mass gap.

Methods in com.compomics.util.experiment.biology with parameters of type TagComponent

Modifier and Type	Method and Description
boolean	MassGap.isSameAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)
boolean	AminoAcidSequence.isSameAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)
boolean	AminoAcidPattern.isSameAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)
boolean	MassGap.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)
boolean	AminoAcidSequence.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)
boolean	AminoAcidPattern.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences)

Uses of TagComponent in com.compomics.util.experiment.identification.amino_acid_tags

Methods in com.compomics.util.experiment.identification.amino_acid_tags that return types with arguments of type TagComponent

Modifier and Type	Method and Description
ArrayList<TagComponent>	Tag.getContent() Returns the content of this tag as a list.

Methods in com.compomics.util.experiment.identification.amino_acid_tags with parameters of type TagComponent

Modifier and Type	Method and Description
boolean	TagComponent.isSameAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences) Indicates whether another component is the same as the component of interest.
boolean	TagComponent.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingPreferences sequenceMatchingPreferences) Indicates whether another component is the same as the component of interest.