com.compomics.util.experiment.quantification.reporterion

Class ReporterMethod

java.lang.Object

com.compomics.util.experiment.quantification.reporterion.ReporterMethod

All Implemented Interfaces:

Serializable

public class ReporterMethod
extends Object
implements Serializable

This class contains information relative to a reporter quantification method.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ReporterMethod(String name, ArrayList<Reagent> reagents) Constructor for a reporter method.

Method Summary

Modifier and Type	Method and Description
String	getName() Returns the name of the method.
Reagent	getReagent(String reagentName) Returns the reagent of the given name, null if not found.
Set<String>	getReagentNames() Returns the reagents available in this method.
ArrayList<String>	getReagentsSortedByMass() Returns the list of reagents sorted by ascending mass.
ReporterIon	getReporterIon(String reporterIonName) Returns the reporter ion of the given name, null if not found.
Set<String>	getReporterIonNames() Returns a list containing the names of the reporter ions.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReporterMethod

public ReporterMethod(String name,
                      ArrayList<Reagent> reagents)

Constructor for a reporter method.

Parameters:

name - the name of the method

reagents - list of reagents

Method Detail

getReporterIonNames

public Set<String> getReporterIonNames()

Returns a list containing the names of the reporter ions.

Returns:

a list containing the names of the reporter ions

getReporterIon

public ReporterIon getReporterIon(String reporterIonName)

Returns the reporter ion of the given name, null if not found.

Parameters:

reporterIonName - the name of the reporter ion

Returns:

the reporter ion of interest

getReagentNames

public Set<String> getReagentNames()

Returns the reagents available in this method.

Returns:

the reagents available in this method

getReagentsSortedByMass

public ArrayList<String> getReagentsSortedByMass()

Returns the list of reagents sorted by ascending mass.

Returns:

the list of reagents sorted by ascending mass

getReagent

public Reagent getReagent(String reagentName)

Returns the reagent of the given name, null if not found.

Parameters:

reagentName - the reagent name

Returns:

the reagent of interest

getName

public String getName()

Returns the name of the method.

Returns:

the name of the method