Uses of Interface
com.compomics.util.interfaces.Modification

Packages that use Modification

Package	Description
com.compomics.util.protein	Classes concerning useful Objects and their operations for modeling and handling proteins.

Uses of Modification in com.compomics.util.protein

Classes in com.compomics.util.protein that implement Modification

Modifier and Type	Class and Description
class	ModificationImplementation This class implements a specific Modification.

Methods in com.compomics.util.protein that return Modification

Modifier and Type	Method and Description
static Modification	ModificationFactory.getModification(String aTitle, int aLocation) This method will return a Modification instance from a title.
static Modification	ModificationFactory.getModification(String aCode, String aResidue, int aLocation) This method takes a code and a residue (the residue for the N-terminus is NTERMINUS and for the C-terminus CTERMINUS!) and converts this into a Modification instance if possible.

Methods in com.compomics.util.protein with parameters of type Modification

Modifier and Type	Method and Description
void	AASequenceImpl.addModification(Modification aModification) This method adds a modification to the list of modifications.