Package com.compomics.util.protein

Classes concerning useful Objects and their operations for modeling and handling proteins.

See: Description

Class Summary

Class	Description
AASequenceImpl	This class represents a sequence for a protein or peptide.
DualEnzyme	This class implements an enzyme with a dual specificity; the N-terminus of a resultant peptide will have certain residue, the C-terminus will have another, eg.
Enzyme	This class implements the functionality for an Enzyme.
Header	This class represents the header for a Protein instance.
ModificationFactory	This class can be used to generate a Modification instance from a code or title.
ModificationImplementation	This class implements a specific Modification.
ModificationTemplate	This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.
MolecularFormula	This class represents the molecular formula.
Protein	This class implements the behaviour for a Protein instance.
RegExEnzyme	This class implements the functionality of an Enzyme by simulating digestion based on a regular expression.

Enum Summary

Enum	Description
Header.DatabaseType	A list of the database types.

Package com.compomics.util.protein Description

Classes concerning useful Objects and their operations for modeling and handling proteins.