com.compomics.util.protein

Class MolecularFormula

java.lang.Object

com.compomics.util.protein.MolecularFormula

public class MolecularFormula
extends Object

This class represents the molecular formula. Basically it count the number of atoms. Created by IntelliJ IDEA. User: Niklaas Date: 16-Aug-2010 Time: 08:25:22

Constructor Summary

Constructors

Constructor and Description
MolecularFormula() Default constructor
MolecularFormula(Sequence lSequence) Constructor.

Method Summary

Modifier and Type	Method and Description
void	addElement(MolecularElement lMolecularElement, Integer lCount) Method to add MolecularElements to this formula
void	addMolecularFormula(MolecularFormula lMolecularFormula) Method to add whole formulas to this formula
int	getElementCount(MolecularElement lMolecularElement) Getter for the count of a specific element
String	toString() To string method

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MolecularFormula

public MolecularFormula()

Default constructor

MolecularFormula

public MolecularFormula(Sequence lSequence)

Constructor.

Parameters:

lSequence - the amino acid sequence

Method Detail

addElement

public void addElement(MolecularElement lMolecularElement,
                       Integer lCount)

Method to add MolecularElements to this formula

Parameters:

lMolecularElement - The molecular element

lCount - The count

addMolecularFormula

public void addMolecularFormula(MolecularFormula lMolecularFormula)

Method to add whole formulas to this formula

Parameters:

lMolecularFormula - The MolecularFormula to add

getElementCount

public int getElementCount(MolecularElement lMolecularElement)

Getter for the count of a specific element

Parameters:

lMolecularElement - The MolecularElement to get to count for

Returns:

Int with the count

toString

public String toString()

To string method

Overrides:

toString in class Object

Returns:

String