com.compomics.util.protein

Enum Header.DatabaseType

java.lang.Object

java.lang.Enum<Header.DatabaseType>

com.compomics.util.protein.Header.DatabaseType

All Implemented Interfaces:

Serializable, Comparable<Header.DatabaseType>

Enclosing class:

Header

public static enum Header.DatabaseType
extends Enum<Header.DatabaseType>

A list of the database types. As there are no standard database names, this is only an internally consistent naming scheme included to be able to later separate the databases. For example when linking to the online version of the database. The links themselves are not included as these might change outside the control of the compomics-utilities library.

Enum Constant Summary

Enum Constants

Enum Constant and Description
Arabidopsis_thaliana_TAIR
C_Trachomatis
Drosophile
EnsemblGenomes
Flybase
GAFFA
Generic_Header
Generic_Split_Header
GenomeTranslation
H_Influenza
H_Invitation
Halobacterium
IPI
Listeria
M_Tuberculosis
NCBI
NextProt
PSB_Arabidopsis_thaliana
SGD
UniProt
UniRef
Unknown
UPS

Method Summary

Modifier and Type	Method and Description
String	getFullName() Returns the full name of the database, null if not set.
String	getPmid() Returns the PubMed id of the database, null if not set.
static Header.DatabaseType	valueOf(String name) Returns the enum constant of this type with the specified name.
static Header.DatabaseType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

UniProt

public static final Header.DatabaseType UniProt

EnsemblGenomes

public static final Header.DatabaseType EnsemblGenomes

SGD

public static final Header.DatabaseType SGD

Arabidopsis_thaliana_TAIR

public static final Header.DatabaseType Arabidopsis_thaliana_TAIR

PSB_Arabidopsis_thaliana

public static final Header.DatabaseType PSB_Arabidopsis_thaliana

Drosophile

public static final Header.DatabaseType Drosophile

Flybase

public static final Header.DatabaseType Flybase

NCBI

public static final Header.DatabaseType NCBI

M_Tuberculosis

public static final Header.DatabaseType M_Tuberculosis

H_Invitation

public static final Header.DatabaseType H_Invitation

Halobacterium

public static final Header.DatabaseType Halobacterium

H_Influenza

public static final Header.DatabaseType H_Influenza

C_Trachomatis

public static final Header.DatabaseType C_Trachomatis

GenomeTranslation

public static final Header.DatabaseType GenomeTranslation

Listeria

public static final Header.DatabaseType Listeria

GAFFA

public static final Header.DatabaseType GAFFA

UPS

public static final Header.DatabaseType UPS

Generic_Header

public static final Header.DatabaseType Generic_Header

IPI

public static final Header.DatabaseType IPI

Generic_Split_Header

public static final Header.DatabaseType Generic_Split_Header

NextProt

public static final Header.DatabaseType NextProt

UniRef

public static final Header.DatabaseType UniRef

Unknown

public static final Header.DatabaseType Unknown

Method Detail

values

public static Header.DatabaseType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Header.DatabaseType c : Header.DatabaseType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Header.DatabaseType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getFullName

public String getFullName()

Returns the full name of the database, null if not set.

Returns:

the full name of the database

getPmid

public String getPmid()

Returns the PubMed id of the database, null if not set.

Returns:

the PubMed id of the database