com.compomics.util.pdbfinder.das.readers

Class DasAlignment

java.lang.Object

com.compomics.util.pdbfinder.das.readers.DasAlignment

public class DasAlignment
extends Object

DasAlignment.

Author:

Niklaas Colaert

Constructor Summary

Constructors

Constructor and Description
DasAlignment(String aDasAlignment) Constructor.

Method Summary

Modifier and Type	Method and Description
AlignmentBlock[]	getAlignmentBlocks() Returns the alignment blocks.
String	getExperimentType() Returns the experiment type.
String	getHeader() Returns the header.
String	getPdbAccession() Returns the PDB accession.
String	getPdbGroup() Returns the PDB groups.
String	getResolution() Returns the resolution.
String	getSpAccession() Returns the SP accession.
String	getTitle() Returns the title.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DasAlignment

public DasAlignment(String aDasAlignment)

Constructor.

Parameters:

aDasAlignment - the DAS alignment

Method Detail

getResolution

public String getResolution()

Returns the resolution.

Returns:

the resolution

getExperimentType

public String getExperimentType()

Returns the experiment type.

Returns:

the experiment type

getHeader

public String getHeader()

Returns the header.

Returns:

the header

getTitle

public String getTitle()

Returns the title.

Returns:

the title

getPdbAccession

public String getPdbAccession()

Returns the PDB accession.

Returns:

the PDB accession

getSpAccession

public String getSpAccession()

Returns the SP accession.

Returns:

the SP accession

getAlignmentBlocks

public AlignmentBlock[] getAlignmentBlocks()

Returns the alignment blocks.

Returns:

the alignment blocks

getPdbGroup

public String getPdbGroup()

Returns the PDB groups.

Returns:

the PDB groups