Package | Description |
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com.compomics.util.nucleotide |
Useful objects for modeling and handling nucleotides.
|
com.compomics.util.protein |
Classes concerning useful Objects and their operations for modeling and handling proteins.
|
Modifier and Type | Method and Description |
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Protein[] |
NucleotideSequence.translate()
This method translates the nucleotide sequence in six reading frames.
|
Modifier and Type | Method and Description |
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Protein[] |
RegExEnzyme.cleave(Protein aProtein) |
Protein[] |
Enzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance.
|
Protein[] |
DualEnzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance.
|
Protein[] |
Enzyme.cleave(Protein aProtein,
int minPeptideLength,
int maxPeptideLength)
This method is the focus of the Enzyme instance.
|
Protein |
Protein.getCTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the C-terminus
to the requested size.
|
Protein |
Protein.getNTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the N-terminus
to the requested size.
|
Protein[] |
DualEnzyme.oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into
YR peptides.
|
Modifier and Type | Method and Description |
---|---|
Protein[] |
RegExEnzyme.cleave(Protein aProtein) |
Protein[] |
Enzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance.
|
Protein[] |
DualEnzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance.
|
Protein[] |
Enzyme.cleave(Protein aProtein,
int minPeptideLength,
int maxPeptideLength)
This method is the focus of the Enzyme instance.
|
Protein[] |
DualEnzyme.oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into
YR peptides.
|
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