Package | Description |
---|---|
com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
|
com.compomics.util.experiment.identification.protein_sequences |
Protein sequence handling related classes.
|
Modifier and Type | Method and Description |
---|---|
boolean |
Protein.isSameAs(Protein anotherProtein)
A method to compare proteins.
|
Modifier and Type | Method and Description |
---|---|
Protein |
SequenceFactory.getDecoyProteinFromTarget(String accession,
boolean reindex)
Returns a decoy protein from a target protein or looks for the sequence
in the cache if not found.
|
Protein |
SequenceFactory.getDecoyProteinFromTargetSynchronized(String accession,
boolean reindex)
Returns a decoy protein from a target protein or looks for the sequence
in the cache if not found.
|
Protein |
SequenceFactory.ProteinIterator.getNextProtein()
Returns the next protein.
|
Protein |
SequenceFactory.getProtein(String accession)
Returns the desired protein.
|
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