Uses of Package
com.compomics.util.experiment.identification.matches

Packages that use com.compomics.util.experiment.identification.matches

Package	Description
com.compomics.util.experiment.biology	Experiment classes related to biological entities.
com.compomics.util.experiment.identification	Experiment classes related to identifications.
com.compomics.util.experiment.identification.amino_acid_tags.matchers	Tag matching classes.
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.
com.compomics.util.experiment.identification.matches_iterators	Identification match iterators.
com.compomics.util.experiment.identification.ptm	Additional PSM scoring classes.
com.compomics.util.experiment.identification.spectrum_annotation	Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators	Spectrum annotation.
com.compomics.util.experiment.io.identifications	Experiment identification classes.
com.compomics.util.experiment.io.identifications.idfilereaders	Experiment classes related to reading search engine files.
com.compomics.util.experiment.massspectrometry	Experiment classes related to spectra.
com.compomics.util.gui.spectrum	Spectrum and Chromatogram visualization GUI classes.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.biology

Class and Description
ModificationMatch This class models the match between theoretic PTM and identification results.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.
PeptideMatch This class models a peptide match.
ProteinMatch This class models a protein match.
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.amino_acid_tags.matchers

Class and Description
ModificationMatch This class models the match between theoretic PTM and identification results.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches

Class and Description
IonMatch.MzErrorType Enum of the supported error types.
ModificationMatch This class models the match between theoretic PTM and identification results.
ProteinMatch This class models a protein match.
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches_iterators

Class and Description
PeptideMatch This class models a peptide match.
ProteinMatch This class models a protein match.
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.ptm

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotation

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications

Class and Description
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications.idfilereaders

Class and Description
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.massspectrometry

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.spectrum

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.