Package | Description |
---|---|
com.compomics.util.experiment |
Gene factory classes.
|
com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
|
com.compomics.util.experiment.quantification.reporterion |
Experiment classes related to reporter ions.
|
Modifier and Type | Method and Description |
---|---|
Sample |
MsExperiment.getSample(int id)
Returns a single sample accessed by its index.
|
Modifier and Type | Method and Description |
---|---|
HashMap<Integer,Sample> |
MsExperiment.getSamples()
Returns the implemented samples.
|
Modifier and Type | Method and Description |
---|---|
void |
MsExperiment.addAnalysisSet(Sample sample,
SampleAnalysisSet analysisSet)
Method to link an analysis set to an experiment.
|
SampleAnalysisSet |
MsExperiment.getAnalysisSet(Sample sample)
Returns the analysis set corresponding to a sample.
|
void |
MsExperiment.setSample(int index,
Sample sample)
Set a new sample.
|
Constructor and Description |
---|
SampleAnalysisSet(Sample referenceSample,
ArrayList<ProteomicAnalysis> replicates)
Contructor for a set of analysis of a sample.
|
SampleAnalysisSet(Sample referenceSample,
ProteomicAnalysis replicate)
Contructor for an analysis of a sample without replicates.
|
Constructor and Description |
---|
MsExperiment(String reference,
HashMap<Integer,Sample> samples)
Constructor for an experiment.
|
Modifier and Type | Method and Description |
---|---|
boolean |
Sample.isSameAs(Sample otherSample)
Comparator for samples.
|
Modifier and Type | Method and Description |
---|---|
Sample |
ReporterIonQuantification.getSample(String reporterIonName)
This method returns the sample associated to the given ion.
|
Modifier and Type | Method and Description |
---|---|
void |
ReporterIonQuantification.assignSample(String reporterName,
Sample sample)
Assign a sample to an ion referenced by its static index.
|
String |
ReporterIonQuantification.getReporterIndex(Sample aSample)
This method returns the reporter ion name associated to the given sample.
|
Copyright © 2016. All rights reserved.